BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB029H06LP1|AL429126
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig536 576 e-164
3x_Contig863 353 4e-97
>3x_Contig536
Length = 2010
Score = 576 bits (289), Expect = e-164
Identities = 375/402 (93%), Gaps = 2/402 (0%)
Strand = Plus / Minus
Query: 1 gatccagaaagtgtgcgggtnatac-tacaagcggggtgaatggaactggattggaccag 59
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 644 gatccagaaagtgtgcgggtaatacctacaagcggggtgaatggaactggattggaccag 585
Query: 60 ctaataacgttactagaggacaaatgaagggagctcgcggtacgtcagtggaatcatccc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctaataacgttactagaggacaaatgaagggagctcgcggtacgtcagtggaatcatccc 525
Query: 120 taaaggagaccagaaaatctaaagtttcacatgagawaactccgggaagtcacgtgatgc 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 524 taaaggagaccagaaaatctaaagtttcacatgagataactccgggaagtcacgtgatgc 465
Query: 180 atacagagcatgaatttggcccttatacatcggaagaaatcggaacactacggataaaaa 239
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 464 atacagagcatgaatttggcccttatacatcggacgacctcggaacactacggataaaaa 405
Query: 240 gctcgttgagccaaaatggacgaatagaactcatgaagagagttagtggctcttcccttg 299
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 404 gctcgttgagcccccctggacgaatagaactcatgaagagagtcagtggctcttcccttg 345
Query: 300 cgcgcgcttctggttgaaaacaagtgacttgtagttacgtagatggatcgctttgtaata 359
|||||||||||||||| || |||||||||||||||||||||| |||||||||| |
Sbjct: 344 cgcgcgcttctggttg-ccccacgtgacttgtagttacgtagatgaatcgctttgtcctc 286
Query: 360 acgactcatatttatcagtccaagtcttacttttcatacatt 401
|||||||| ||| || ||| | ||||||||||| |||||||
Sbjct: 285 ccgactcatctttctccgtcaacgtcttacttttaatacatt 244
>3x_Contig863
Length = 2811
Score = 353 bits (177), Expect = 4e-97
Identities = 199/207 (96%), Gaps = 2/207 (0%)
Strand = Plus / Plus
Query: 673 cctagagtwaggatattttgttgadagagactttcagcacttattgatataaatatcaac 732
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 4 cctagagttaggatattttgttgaaagagactttcagcacttattgatataaatatcatc 63
Query: 733 atctctttcttcttctgatttcagggatactatcagttcaaataggkagaaaccggtaaa 792
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 64 atctctttcttcttctgatttcagggatactatcagttcaaataggtag-aaccggtaaa 122
Query: 793 rtaatagtcaagttttcaagcagtcatggtaagtgttacagttcttggctcatctggkgg 852
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 123 gtaatagtcaagttttcaagcagtcatggtaagtgttacagttcttggctcatctggtgg 182
Query: 853 ttattggtcaaccactttcgttgttgt 879
||||||||||||||||||||||||||
Sbjct: 183 -tattggtcaaccactttcgttgttgt 208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,625
Number of Sequences: 1807
Number of extensions: 17625
Number of successful extensions: 2085
Number of sequences better than 1.0e-20: 2
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)